NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1004315

Scaffold Ga0272438_1004315


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1004315 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17087
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F008735Metagenome328Y
F038009Metagenome166Y
F061399Metagenome131Y
F087979Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10043151F002432GAGMHARNNYMQNDXVKXLFMMKFSENFNIFSVISMTSFYFNKSFHSRMSFDSDATDYETIRERLEARKADDIVIXMKELLIFDHQQLKKTKQIIEAQINKHRXDVIYEVDDXVXLFFRNIKTTRSCKDLKDKQLKLYQITVKVEIFYHLRLSRSMKQLHSMFSSKLLRSYSQDSLSEQHLKSSRSLTIENDDHXEIDDILNFRCYRDXIQYKIKXTRLDXNNEXYYVDKEEFESSKEVLVEFHKLYSDKSH
Ga0272438_100431510F008735N/AVSLFIYNELXLNINDLDSMKEIMIIVHVHALYQTLLSCIQLIFVFLILKYVEKLLKFRSNEDNDKVYKEMNNKRRLIIQDLCNNLNYHHKRLRIQFYINXRIENNEXKXNNNIMLLNLILKLLHYAKDFNXIFNHTLNKLFDSMLIIDXKIVR
Ga0272438_100431511F087979N/AMKEKNESSTFIYMNXAELRLDSSFIDLRLQKFMHMTEIIKIELLRLN
Ga0272438_10043156F061399N/AMYTRFKLFKQQTQEXLCFLSVFKHRRCNVFMNYVNSLSLNIFISITYKYVLIFVDHFIKMRYLIFIIFMKVEKAINCFYAHVSKHHYLLEFFMSDXDTQFIFNVXKYICKMLKINVKLSTMYHFEINDQIERINAVMKHYFQVFVNYMQNDXVKXLSEVEFIINNASSLIILTSFFLINLSQNSHLNFKSSESLLKNLMFQAXDNLINVKKFIKKMKKLTEHLCDEMLIAQIIYEFNVNLFHHSCFKYFVEDEVXLNVCNFSITHLTVKLNDHNVDFFKIKHVFKNHFLIIELNLSTFMKIHSIFHVTLLNHITSDFLSS
Ga0272438_10043158F038009N/AMIKASSFQLNYVKLYKRLIELICLKNNRSSKEKKISTLNFXXVFFLNDLKNTIKNFLFEMKDKIEXDLFLVNKLNINXLFMSKQRVILLLVSKXETELLLASKLRIELLLVSELKTELLLLSEXETKLLFASKLNAKLLLVSNL
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