NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1004374

Scaffold Ga0272438_1004374


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1004374 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16920
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (17.39%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020121Metagenome225Y
F021026Metagenome220Y
F080690Metagenome114Y
F087979Metagenome109Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100437413F087980N/AMKSLHNFSIDDEHAVEQFAQSVIENSVEIFRAMRELQNQVXQHDVIILFSFIILSFSVYIKLNSQFLAMIAQIIAQILNNQSSFIIHLSANFVAVIIASKFEKLFDISEYERNKDQLNAXEQSLIQRMNMNDDHYFSY
Ga0272438_100437414F087979N/AMKEKNENSTFIYINXAESRLDSSSIDLRLQKFAHMTEIIKTKLLKLD
Ga0272438_100437419F080690N/AMKLSHNLLIDNERAVEQFTQSMIENSVKIFRVMQELQNQVXQHDVITSFSFIIFSSSIYIKLNSQSFAIIAQIIAQILNNQSSFIIHFSANSVAVFIAFRFKKLLNIFKYEKNKDXLNAXKQSLIQRMNVNDNHYLSHQVKIVYVKSXLIIDKKTHNLMNQYXVNDLYIIFIFADXQHKLHHCCDNSFKTENAHLYLREILKQDMNSFADYYNLFYQKKEHSLMKDFLLIDCLKRNVNYF
Ga0272438_100437422F021026N/AMIVFYILRQAQSKVLTLVLIDSEVFAYVFMNKFFAQQHHFFLHQLTHFHRLXEFHDQVALINDIIHVVEITMILDEHIERLFFYVIELNQYFIIMSLSXLHHHVIDVNFEHNILILSFFFCLNYCCQFLVKIYNFNQQEENFSLEVNKVAFLLSRSQFAHKKQLNSXITHKKQFSLQIIHKKQFSLQIIYKKQFSIQFTCKK
Ga0272438_10043748F087979N/AMKEKNENSTSIYMNXAESRLDSSSIDLRLQKFAHMTEMIETELLRLN
Ga0272438_10043749F020121GAGMKKLTEHLCDEMLIVQIIYEFNVNFFHRSCSRYFVEDEVXLNARNLSIARLAVKLDDHNVDFFKIKRVFKNNSLIIELNLSAFMKIHSIFHVILLSHITSDFLSNQHQKSQEFVVIKNDERFXYVNSILNFKRDRHYNSSLLKYYIDXEDHFSTXKSFHLLNNCEQALNEYHFVNSVAEESHVLSCVMSQCQCQEL
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