NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1004390

Scaffold Ga0272438_1004390


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1004390 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16876
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (20.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041516Metagenome159Y
F064254Metagenome128Y
F089603Metagenome108Y
F102180Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100439013F041516N/AMIQRAIYIHEAYNSSFKDHKIIHEKENFSNIKKMLHMSKESILVEDFNLHHFT
Ga0272438_100439024F089603N/AMYIDASQIQKKIAKIETEIETAVIFTHELVRCSKATSVSGKIIIMKAKLQAISDAIVMCSEKALKNSEI
Ga0272438_10043904F064254N/AMQELYELVSSLFLLSFIXFFDDIIVLNXFSMLVESIIQIIAVITLLISRSFFKFMMFSSYCIIFHSVFHLKHVNKTCLIDIQSLLHLHVVVVILNTHLSCRNXLKSIFLMRSCVNNALXNFAXFLCSCRC
Ga0272438_10043905F102180GAGLTLVIIHHDKLKELVAKAKHFADVVTVNQECHEKIYKVYSDSQTSLKTVKAMISTKDQTCLQXVQIVHESI
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