NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1004557

Scaffold Ga0272438_1004557


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1004557 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16406
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (43.48%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F021452Metagenome218Y
F048685Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10045571F021452N/AMLDDSFDFKSFIVDVILNSLEKIFRSFVLINIKVTDMMFIDDSLISELCERFDIQSISLFKSKSIRSYDKIFDRRSITHALYISVIIQEHKNEIMSLLITRLNQHKIIIDNL
Ga0272438_100455710F000597GAGGVTFIKDAMKDVLISSTTSMSDDSFASESLTTECVLSSKEISYSLKSLIDIEAADYSFIDEVIAQIVSDQLQIEPLTLIKAKSIREFDDYYAKKLITHVIYSNLTVQDHTIDIASMLITRLSQHQMILEKT
Ga0272438_100455711F005901AGAAGMNDKLIVNVDQFDNETICIVYMLSRLEDDAAEHIYARRRHDSSRSYYSIYKLFEHLKEIYDEVNKNRKCRREYNALRQADKFFNVFYFDFIKLFSYLEYDDRTLMNDLQNKINNRLQNALSVCLEDFTSLHRLKIFFQDVNSKQRVNYQLRSERCTVIVKVTVIPDKRATTFLSAVMTSIIDYVKSTIFSISESARSSIICYICKISSHLFKNCSQLNKIDISAP
Ga0272438_10045576F048685N/AMYRSDKQNIKIDALTRRANVVLRDSEDERIRYQQITILTSNRMKIADLEKNISESIYKQVLETNEIDENCTLLREAIAKDEAQYEDIKLKNCRTQNEILYHDNQL
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Biomedical Sciences Research Center "Alexander Fleming"
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