NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1004619

Scaffold Ga0272438_1004619


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1004619 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16258
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (31.58%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F021026Metagenome220Y
F076668Metagenome117Y
F086375Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10046192F021026N/ALKLFEFNLTFKNNHMIVFYILRQAQSKVLTLTLIDNEISVYVFMNKFFTQQHHFFLHQLIHSCRLQEFNNQVILINDIIHVVKITMILNEHIKKLFFYVIELSQYLIIMSLSXLHHHVIDINFKHNILILSFFFYLNHCY
Ga0272438_10046194F008735N/AVNLLIYDESXLDINDLDSMKEIMIIIHVHALYQTSLLCIQSIFVSFILRYVEKLLKFKSDKDSNRICREINDEERLIIQDLCNDLRYYHKKLRIQFYINXRTENDEXRXNNNIMLSNLILKLLHCTKDFDXIFDYTLSELFNSTFIVDQEIVRXLYLSKRITRRDFNVXKCCRKYKSFVMSKTRLN
Ga0272438_10046197F086375N/AMFTLFINSKFITSXNHGENXFDEIKEHYKRQNNDRVIIFKRLHKLRQFNVXKEVNEINKAVMKDNVRDEIEQEQKNKDIHDNASQ
Ga0272438_10046199F076668N/ALLTSSFLACASARKTSKSSMHSTNHYAIKETSVFKFTTTTKKIMHMSNALSTDILMLCNRKDATNQTLLRCAKFENIRRLQKISFSKXSSKDXLERLCMIMLKRTCYNMIFAFSALSXMLFKKSLKTLXFSLXKVSALLFCIITLVVEFSLTFCSMQTSTXXQFMSNALSFKIEI
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Institute for Fundamental Biomedical Research
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