NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1004848

Scaffold Ga0272438_1004848


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1004848 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15660
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008598Metagenome330Y
F042663Metagenome157Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100484813F074201AGGAGGMTTSGHATDDTDARTGQKGYLMDTVDITPTPEACRQIARLFRARQADAEALAARAEYALDTLDTLDDDTLAPWGRALLVAAFEALYEAEGARALKMREGVEALGPYAATGGEGSDDAA
Ga0272438_100484816F042663AGGAMTTHAIPALHLAASIPSIPPRTAIALDDGDVSVTATFRPHDPIDATEVVVSPDLPDATALLTLLDATIARLIAYRDAYQQAMDDDADPAPVRAPLPLPVPWYAW
Ga0272438_10048488F008598AGGMGRGSQHRDNAEDRSRLLASITLTTDQITGGAIDALAEALHAAGVMVERHAFLPVRGEEQHPWGVLLLATSGSPLPLARLVVPATAPVGVTPALAAALGVGVGEWPAPATLQLKADGVFVSLRGRDLLDITTALDALPAQLARLDTRQEERRLVYSEGIWRIDP
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