NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1005538

Scaffold Ga0272438_1005538


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1005538 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14293
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (26.32%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048017Metagenome148Y
F091080Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10055381F048017AGGMNTKVNALTXMSLANVSESVQXLEDCFQTILTFDRVNVLFIESKANLYQQVXMINQTNELCSKYRQAMNENKLKFHITKLKNCKIIDDVLFKKDLLXVSENMHTKLLQEVHDQSLIFHLNNKXIIDLV
Ga0272438_10055388F091080GAGMLIDCLSLKRQIFNVQIFNENINXLFAESIKIXFLFNQRFSMIILCXSKQVINKSIISFLCSXIIINVYRACVIDFRSEISSYDXINFDFDSDIDXISKHLHSSDIKDSSMKVISVTSIFIRARDLNIFSRLLKMTSTVNDLKLNKSSDMLMKQNISILLSVTTLTKADHFSNLQRSCALKSS
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