NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1005590

Scaffold Ga0272438_1005590


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1005590 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14196
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.88%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F061402Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100559016F061402N/AMIEFIDNNVILSSIEQSAFFLNKDFHSRMSFDLNSTEYEITQARIEASKAKNIFEHMK
Ga0272438_10055908F000597N/AMSMSDNSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIEFLTLIKAKSIQEFNDHYAKKLITHVIYLNLTVQSHTIEIAFILITQLN

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