NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1006044

Scaffold Ga0272438_1006044


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1006044 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13371
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F066295Metagenome126Y
F091080Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10060442F091080N/ALFAKFIKIXFLFNQRFSMINLYXFKQVINKNIISFLCSXIMINVYKVCVINFXSEISSYNXIDFDFNSDIDXISKCSHNSDIKDSSMKIMLVTSVFIRVKDLNIFFRLLKMTLTVNDLKSNESLNMLMKQNMSILLSVITLTKTDCFSNLLQFCASELT
Ga0272438_10060446F066295AGAAGLKTRLQAKENTSSDFIYSERSRFQKISDSSLFTDEKNSIXKNXYEKIQNKLEINVDLFSNEXVKLNYIHSRLFNDAAEITQTRCKDDCVNLYRIVEDLLKELAQLFDDSNKEVNFRKEYYNLIQEFKKFNEFYTQFQRLSFYLDYYKK
Ga0272438_10060449F002432N/AMMKFSDNSNIFLITLMILFYFNKEFHSXMSFDSDMIDYETICERLEARKANDIVIQMKKLLNFDHQQLKKIKLIIKVQINKHKXNITYEVNDXIXLSFRNVKTTRLCKDLKDKQLDFYQITVKVNIFYHLHLSVSMKHLHSMFSLKLLQSYLENSLSEQHSEXFRSITIEDNEHXKIDNILNFRCY
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