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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1006397 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12827 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (11.11%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028368 | Metagenome | 191 | Y |
| F033265 | Metagenome | 177 | Y |
| F044226 | Metagenome | 154 | Y |
| F087978 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100639710 | F033265 | N/A | LNYFCQKTITSFAQSYVISSKNITMFHVIEKTMISQSKKXFKSCYETFINCMIYSVLLFQTETLNSYQLCERVFASDXKSQLVYSQSIIXRSMIRXNKSIKTLNVNLEFTAITCRTTELNEYLXXNSATISISSQSSQXSLFTLIKIFILEXVSIQIQLTTKSFMNDXKLEKQMILSFKXKSYXASIINNXKRRSXSLKHKSINIDEMLFIR |
| Ga0272438_100639711 | F087978 | N/A | MFSLKLLQLYSEDLLSEQHAESLRLIIINDDDNEHXEINDILNFRCYQDXIQYKIKXKDLDKDDKXYYVNKDKFNDFKKVLNEFHMLYSRKSR |
| Ga0272438_10063973 | F044226 | N/A | MKFSNNFNIFSITSMIFFYFNKEFHSXISFDSNMTDYKTTHERLEAKKADDIVI |
| Ga0272438_10063974 | F087978 | N/A | MFSLKLLQSYSEDSLSEKHSESLRLITIKDDEHXEINDILNFKRYXGXIQYKVKXTDLNKDDEXYYVDKEKFDDSEKVLNEFHKLYSVEIMFRI |
| Ga0272438_10063977 | F028368 | N/A | LLQFQFEFXFKKLIISSKVIEEIKIISLCKLNEILLKENYFEKSFLIDAHFILQNQFFSLHSLINSDSVTHTLIHVNLVNRVCKKLEIQFIFLTKEKLIKDYDEKIFKKIIIYKILFNLIIKSHKKLTVLMLIADIDHHKVILSKLXMNKNEILLNMQNDVIVFLNQLNTSISIFSISLNSKHSSXLXSTSSSSITQTKIFIMLKRLISITAQKESFSIXSINATLFKTLLNHLKKNQTEVFALFMININRKITYNTQCNLNALNVSLINEMTQNLKDIKAKLSSIYHEFLNVFDXTQLNKLLFHRFYDHKIELINDSMLSRCRVY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |