NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1006752

Scaffold Ga0272438_1006752


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1006752 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12314
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008169Metagenome337Y
F008735Metagenome328Y
F019260Metagenome230Y
F038010Metagenome166N
F064254Metagenome128Y
F071806Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10067521F038010N/AMLSDNLESNKINVNLSVLIDIDVIDYAFIDDSFAQRHSLLCFSLSEICILQKFDDQSVVFNSITHYALVKLRVSSEEL
Ga0272438_100675210F008735N/AVSLFIYDELXLDIDDLDSMKEIMIIVHVHALYQTLLSCIQLIFVSLILKYVKKLLESRSNEDSDRVHREMSDKRRLIVQDLCNDLSYHHERLRIQFYIEXRTKNDEXEQNDNIMLSNLILKLLHYAKDLN
Ga0272438_100675211F008169N/AMSSHSLIEERFKEFXNRFSQISDADSSKSRTKLSSAASFIHEDDESFAETIIFFVFYEIXKARSLVLDEETDRLYELDKQQEDEIKELKTRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXKNXYGKIQNKLEINVDLFSNERVKLSYVHSRLFDDAAEITQARRERDCVNLYRIVDDLLKELAQLFDDSNKKVNFYREYYNLVQEFKKFSEFYTQFQRLSFYLDYHKKQLIADLKDKIHLRLRFVXIDQLVQSDSLKEIRFYLIRLNNDQRVIREIKDKIKRVNDLSKTIFHRATVVTQSVDHLKSD
Ga0272438_10067522F019260N/AMIQELKSMSRIDIKLEKYSNSELYIKERENKLNQFIFKLISKLKLNANHYSTLEFRLLYEYSRLSRNAVAQALSCMTAQHDKLVTFEQLVVLLRQVFDDSDKQEIAQRFISALRMRNRIFIEYLFDFQQHINAIEYDVVTRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLFKSKAVIHSVSVISTVLAYLVKYATLSTGSKATISSSRNFMNLSIINMKKRDSLILEKHQHRMINHLYLYCNKSEHQTAICNSKFKIQLRVISLFVFAISIDNLAFDTSLVLKKV
Ga0272438_10067528F071806N/AMKLQSQIITLNSVQLHLFSIISALLQILTFMNLEIKEFNVEDVKSQLDQDILNLDEDSADILTQTLXKQIKINNKFAA
Ga0272438_10067529F064254N/AMQELYESVSFLFFLSFIXLFNNLTAXNXFSMLIESIIQMIIVAAFMISKSFLKFVMFSSHCIAFHSTFHLKHVNRMCLINIQSLLHLHVVVTTSSTRLSCKNXLKSIFFVHSCVNNALXNFVSXCQIINLI
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