NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1006782

Scaffold Ga0272438_1006782


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1006782 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12275
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020121Metagenome225Y
F023763Metagenome208Y
F028367Metagenome191Y
F048018Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100678211F028367N/ALCNLNKILSKESYFKKFFLINALLISQNQSFSLQSLINSDFIIYTLIHTRLVNKLCKKLKIQSILLVKEKLIQDYDEKIFKKAITHKILSNLMIKSHKKLTVLMLITDIEHHEVILNKLXMNKNEILLNMXHDIIVFFDQLNISISIFSISFNSKHSSXSXSTLTSSTTFNKTFMMLKXSVLIAQKEFFSI
Ga0272438_100678212F020121N/ALINLNQNSHLNFKLSESLFENLMFQAXNKLINVKEFIKKMKKLTEHLHDEMLIAQIIYEFNVNFFRRSCFKYFIEDEVXLNVCNLSITHFAIKLNDHNVDLFKIKHVFKNNFLIMKLNLSVFMKIYSVFHVTFLSYITSNLLSNQHQKSXKLVIIENNERFXYVNSILNFKHDRCYNSSLLNYYVDXKDHFFT
Ga0272438_100678214F048018GAGMYFLSXKYRXFLCSLHSTKEILLXCCASLRSTSIIXTVNLSLISTYSHNVXVRISAESSSRFRMSXFNXDLMFLTLNSSISRFMKTKICKNAEIIENKCNXTESKVIICDXNFMTLMLKMLKMRFLTILRFKTXVFRIV
Ga0272438_100678215F023763GAGMSFQNCLMLILMSRIKYILLFKEIFXATCQSIQLIINLVEMISNVIVKSRQKLTLMSLITTQLLNXHEILKIFVIYDHFNRINKVFKLXSLFLESANNDHTFFIVDFIVILNXIMLFRKVSDXMKNLIFIILRKNVFKHIVQSINFYHNLVILSRTESXMKPE
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