NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1007159

Scaffold Ga0272438_1007159


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1007159 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11788
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021452Metagenome218Y
F036994Metagenome168Y
F065268Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100715912F065268N/AMTKSSESASIACYELQNVRRKSLLSQNQTASKEKDTNVSLNTKEENMNALLFDHEMIKISISTELNAXINIHKADDIVVFIKYICQ
Ga0272438_10071594F036994AGCAGGMWDRVAIEAGSLVDLLIEEVGYRLAIEAGSLVAREREVDRFTGR
Ga0272438_10071599F021452N/AMSDDSFDFKSFIVNVILSNLEKIFRSFALIDIKVIDMTFINKSLMSELCECFDIQSISLSKSKSIQSYDEISERKSITYTLYTSIMIQEHKNEMMFLLIIRLDQHKIIIENF
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