NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1007601

Scaffold Ga0272438_1007601


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1007601 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11295
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F003820Metagenome466Y
F017767Metagenome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10076011F017767N/AMKNVLISLTMSMLNDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIA
Ga0272438_10076012F003820N/AMKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCSESFTSLSHLKKFLQDVNNKQRVNYQLRSERCTVIIKVTAVSDKCITSLSVMTLIINYVKSIIFSISESDQAKSSIICYICKTLDYLFKNCSQLNKIDTSASHAFISRLHEIIILKNKENEKMSFENSETKN
Ga0272438_10076014F002432N/AMTLFYFNKEFHSRMSFDSDMTDYKTTCERLEVRKADDIVIQMKELLNFNRQQLKKTKLIIEVQINKHRXNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLDLYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLRSYSEDSLSEQHSESLRLITIKDDEHXKIDDILNFRRYRDRIQYKVKXTDLDRNDEXYYVDKEKFNDSEKVLNEFHKLYSNKSR
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