NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1007945

Scaffold Ga0272438_1007945


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1007945 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10893
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Hyaloscyphaceae → Hyaloscypha → Hyaloscypha hepaticicola/Rhizoscyphus ericae species complex → Hyaloscypha variabilis → Hyaloscypha variabilis F(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F009580Metagenome315Y
F038009Metagenome166Y
F074204Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10079454F038009N/AMIKASSFQLNYVKLYKRLIELICSKDNRSSKEKIISTLDFXXVFFLNDLKNTTRSFLFQTRDKIERNLFSVNELSINXLLMSEREIISLLVSRRKTELLLSRKXETKLLFASELKTELLLSSEXETRLLLASELNAELLLVSNL
Ga0272438_10079456F074204N/AMIVFCILRQAQSKVLALALIDSEVLTYVFMNKFFMQQHYLLLHQLTHSHRLXEFDDQVALIDDITYVIEITMILDEYIERLFFYVTELNQYFIVMSLSXLHHHVINVNFEHNILILS
Ga0272438_10079457F009580AGCAGMIEVRVKRLKLVDKMICIQISERDLAQKLNFSCRQRDFFIYIDNVTVVNVHDTQSEELLIXAFFSDFARMLQLAVVAQLSLVADFLDLRNDQSLILNDDNDKA
Ga0272438_10079459F008735GAGMIIVHVYTLYQTLLSCIQSIFVLLILRYVEKLLESRSDEDSDRICREMNDKKRLIVQDLCNDLSYHHERLRIQFYIDXRTENDERKXSDNIMLSNLILKLLHCTKDLNXIFDHTLSELFNSTLIVNQKIVRXLYLSERITRQDFNVXKRCRKCRSFIMLETELD

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