NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1008375

Scaffold Ga0272438_1008375


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1008375 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10456
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008115Metagenome338Y
F008169Metagenome337Y
F028368Metagenome191Y
F036994Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100837510F008115N/AMNFITELLLSEDYNIICTIICHLIKERHYVFCHXEDDDISVEETIXIMLXNVYRLHDLFSSIVSNRDFQFILTMXKSLCKRLRITASLFTVYHSEIDDQTKQVNQDVERKLRIYCNYMQNDXVKXISMMKFSDNFNIFSIISMISFYFNKDFHFQMSFNSDTTDYEIIRERLKARKADDIVIXMKELLSFNHQQLKKMKLIIEAQINKHRRDVIYEINDXIXLFFRNIKIMRSCKDLKDKQLESYQITVKAKIFYHFRLSISMKYLHLMFSSKLLQSYSEDLLSEQHAEFFRFIIIDDDDNEHXKIDDILNFRRYQGXIQYKIKXKDLDKDDEXYYVNKDEFNDFKKVLNEFHTLYSRKS
Ga0272438_10083753F008169N/AMSKHLSIEERFKEFQSRFSQTSETDSSKFSSAESFINEDNESFAETVILSVSIENXKTRCMILDRETDQLNELSKQRDNKIKELKTRLQTKEITSSDFIYFKRSRSQKIPDSLXFTDEKNSTXKNXYDKIQNKLEINVDLFSNERVKLSYVHFRLFNDAADVAQSRRKHDCVNFYKIINDFLKELAELFNDSDKKVNFRRKYYNLIQESKKFSEFYTQFQQLSFYLKYHEKQLIINLKDKINSRLRFIXIDQLVQSDSLKEIHFYLIHLNNDQRVIXEIKNKVNLIKCINDLLKIIFHKVVVTQLVDHSKSDHLKSRDAILTSVKEADVLVKTCFICHKSDHSSKECSDRFIRINAVNNEYNHFKFNFDLNFDLKN
Ga0272438_10083754F028368N/AMLIHANLVNRVCEKLEIQSILLTKEKLIKDYDEKIFKKIITHKILFNLIIESHKKLIVSMLITDINHHEVILSKLXMNKNEILLNMQNDVIVFSNQLNTFISIFSISLNSKHSSXLQSTSSSSITXTKIFMMLKRLVSITAQKKSFLIQSINAASFKTXLNHSKKNQTEVFALFMTDINRKIAYNTQCDLNALNVSSINETTQNLKDIKAKLSLKYHEFLNVFNRAQLNKLLSHRFYDHKIELISDSTLSHCQVYXMFSIKLLKIKKYLNENVRIVSRXVNQRKSELNSAXSLKIAITEILRIQKKSKRVPSYIYSRAKQRERSRFAXVSKALE
Ga0272438_10083755F036994AGCAGGMXNRMVIEAGSLVDLLIEEVDYRLAIEAGSLVAREREVDRFTGR
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