Basic Information | |
---|---|
Taxon OID | 3300031448 Open in IMG/M |
Scaffold ID | Ga0272438_1008458 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 10384 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (11.11%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001951 | Metagenome | 612 | Y |
F002432 | Metagenome | 559 | Y |
F008735 | Metagenome | 328 | Y |
F074204 | Metagenome | 119 | Y |
F089602 | Metagenome | 108 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0272438_100845817 | F002432 | N/A | MSFDSNTIDYETTHERLEARKANNIVIQMKELLNFDYQQLKKTKLIIEVQINKHRXNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLDLYQITVKVNIFYHLRLSISMKHLHSMFSLKLLRSYSEDFLSEQHSESLRSITIKDDEHXKIDNILNFRRYQGXIQYKVKXTNLDRNDKXYYVDKEKFDDSEKVLNEFHKLYSNKSR |
Ga0272438_10084585 | F008735 | N/A | MKEIMIIVHIHALYQTLLSCIQSIFVLLIFRYVKKFLESKINEDNDRICKKMNNKRKLIIQDLCNDLSYYHKKLRIQLYIDXRTENDEQRXNDNIMLSNLILKLLHCTKDLNXIFNHTLSELFDSTLIVNQKIVKXLHLSKRVTRXDFNIXKCCRKCRSFIMSKTELN |
Ga0272438_10084586 | F089602 | N/A | MKDEXSSFIKISSEEDDNLSEIIDITLQTVNQREIFHQRIFFLLIEEIVIVNKVIHVLLQNFTKI |
Ga0272438_10084587 | F001951 | N/A | MMKFKFINSSRNEKERNKDIVETTVTKMMIFEFKELLVNAKMLLTLMNEMMIKMKQD |
Ga0272438_10084589 | F074204 | N/A | MIVFCILHQAQFKVLTLTLINSEIFIYVFMNKFFVQQHHFFLHQLTYSCKLQEFDDQVTLIDDITHVVEIIMILDEHIERLFFYVIELSQYFIIISLS |
⦗Top⦘ |