NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1008715

Scaffold Ga0272438_1008715


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1008715 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10150
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F036504Metagenome169Y
F036994Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10087151F036994AGCAGMXDRMIIEADSLVNLLIEEIDYRLVIEAGSLVAREREVDRFTDR
Ga0272438_10087157F001253GAGVTFIKDVMKDVLISSTMSSSNDLFASKSLTTKCVLSSNEISYLLKSLIDIEAADYLFIDKLTAQNVCDYLQIESLSLIKLKSIREFDDHYAKKLITHAIYLNLTV
Ga0272438_10087158F036504N/ALNSLIFIETDDSIXETXNIKIADKLNVNANHYSTEKIHIVYVIFRLKDDADQQIYAKHHIDAFSLYQSLSELLKHLKEIYEDQNLIQKCCCKYVALKQLNKLFSFFYSEFTKIFSFLNYDDITLMNNIQNKINNYLQNVLSVCFIKFSSLNKLKIFLQDVNNKQXINYQLHDEQXTVKLIAASKKRFVSSLISASVFITSYVQLTTFFILESEXSRMLIICFNCKVSNHLSKNCSQLKTSTSKSYAFISCLNEIIMLKEEKKLFTEKLKNETKN
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