Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1008933 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1008933 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9968
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9968

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F018839	Metagenome	232	Y
F036994	Metagenome	168	Y
F037508	Metagenome	167	Y
F071806	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_10089331	F018839	N/A	VVTFNHLTSDLYAAVSIIAMFIELKDEAKLTELDDFTILLNEDDFSLSRVTIEEINLFSI
Ga0272438_10089332	F001253	N/A	MKDVLISSTISSLNDLFASKSLTTECVLSSNKISYSLKSFIDIEAADYSFIDELIAQNVCDHLQIKSLSLIKLKSIRKFDDHYAKKLITHAIYLNLTVQDHMKRFNFMLIIQLN
Ga0272438_10089334	F071806	N/A	MKLQLQIIALNSVQLHLFLIISAFLQILVLMNLEIEEFNVEDVKSQLNQDILNLDEDSADIFTQTL
Ga0272438_10089335	F037508	N/A	VIFRLEDDADQQIYAKHHVNAFSFYQSLLEVLKHLKEIYKDQNLIQKCHHEYIALKQLNKLFSSFYSELTKIFSFLNYNDVTLMNNIQNKINNHLQNVLSVCLIKFSSLDKLKIFLQDVNNKQKANYQLHDE
Ga0272438_10089336	F001253	GAGG	VTFIKDAMKDVLISSTMSSSNDFFASKSLTTECVLSSNEINYSLKSLIDIEAADYSFIDELIAQNVCDHLRIEFLSLIKLKSIKEFNDHYAKKLITHAIYSNLTVQDYMKRFIFMLITQLNQHQMILEKT
Ga0272438_10089337	F018839	N/A	MMIAKVVTFNRLTSNLYVTASIIAMFIESKDEAKLIELNDFTILLNEDDFSLS
Ga0272438_10089339	F036994	GAG	VIIEADSLVDLLIEEIDYRLVIEAGSLVAHEREID

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1008933

Overview

Ecosystem & Geography

Associated Families

Sequences