NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272438_1009560

Scaffold Ga0272438_1009560


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1009560 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9437
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F009580Metagenome315Y
F023763Metagenome208Y
F038009Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10095603F001951N/AMTKLKFINSSKNKKDKDKDIVETTVTEVMIFEFKKLLVNVKMLLTLMNKMMNKMKQD
Ga0272438_10095604F009580AGCAGMIEVRVKRLRLVDKMICIQISEHNLTQRLNFSCKQRDFFIYTDDVTVINVHDTQSEELLVXAFFNDFAXMLQFAIVAQLSLVADFLDLRNDQSLILNNNNDEA
Ga0272438_10095605F038009GAGMIKASSFQLNYVKLYKRLIKLICLRNNRSSRKKRILTLDFXXVFFLNNLKNTTRSFLFQTRNKTEXNLFLVNELSINXLFMSEQKIILLLVSRQKTELLLASELKIELLLVSELKTELLLSSEXETKLLLASELSAELFLVNNL
Ga0272438_10095606F023763N/AMIVKFKQKLTSTSLMMIQLLNXHEILKIFVIHDHLDKIDRVFKLXSLFLESANNDHEFFIVDLVVTLDXIMLLXKVSDXMKNLILIILKENVFEHIVQSINFYHNLVIXIIMMKNNLESENFLKNVECNLTFLRSDKEYIFSDETSERDSYFTIVIDESSIKVCEI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.