NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1009728

Scaffold Ga0272438_1009728


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1009728 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9293
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F050043Metagenome145Y
F094625Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10097285F050043N/AMIKIXSXLKKDEVEENEKLRETERAINKSKIIIHSCLRFIVLTISSTRKINNAYVLSTRHYCCHLHQLHITYTIYNVIYTHYNRRRIIIRLKVSLFLVFSKRFEGFYRELLERTNECASSFIKVNKGINYXGRERTHLEEKTIVMIDXLIEIRSEVRVKSXVEDQIXVSSETLXLCQDIV
Ga0272438_10097287F094625N/AMKLSHNLSIDDERAVEQFTQSVIENSVEIFRAMRELQNQVRQHDVIISFSFIVFSSSVYIELNSQFLATIAQIIAQILNNQSFFIVHLSANSVAAFIASRFKKLFDISEYEKNKDRLNAXEQSLIQRMNVNDDRYFSHRVKIVYVESRLIIDKKTHNLMSQYXVNDLCIIFIFTDX
Ga0272438_10097289F009580GAGMICIQISERNLAQRLDFFREQRDFFIYTDDVTVVDVHDTQSEELFIXAFFNDFARMLQLAVVAQLSLIADFHDFRNDQNLILNNNNDKA
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