NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1009810

Scaffold Ga0272438_1009810


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1009810 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9235
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F055319Metagenome138Y
F074204Metagenome119Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100981010F087980N/AMKLSHNLSINDERAVEQFAQSMIENSVEIFRAMQELQNQVRQHDVITSFSFIVFSSSVYIELNSQFLVIIAQIVTQILNNQSFLVVHSSANSVAVFIASRFKKLFDISEYEKNKDRLNA
Ga0272438_100981011F001951N/AMMTMTKLRFIDSSRNERERDEDTVETTVTEMMIFELKELLVDAEMFLTLMNEMMMKMK
Ga0272438_100981012F055319AGCAGMIEVRMKRLRLVDKMICIQISERNLAQKLDFFREQRNFFIYTDNVTVVNVHDT
Ga0272438_100981013F074204N/AMIVFCILHQAQSRVLILALIDSEVSAYVFMNKFFAQQHHLFLHQLTHSRRLQEFDDQVALIDDIIHVVEITMIFNEHIKKLFFYITELNQYFIVMNLS
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