NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1011774

Scaffold Ga0272438_1011774


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1011774 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8023
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021216Metagenome219Y
F038008Metagenome166Y
F041516Metagenome159Y
F086375Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_101177410F086375N/AMFTLFVNSKSITSRNRDENXFNEIKEHYKRQNNNHVLIFKXLHKLRQFNVXKEVNEINKAAMKDNVKDEIEQERKNKDIHDNASQ
Ga0272438_10117742F021216N/AMKSRIKSNATRREHHELEKAFRNHECSDDDHSNDILNEHIESISSCDVIKESDKK
Ga0272438_10117743F038008N/AMKXSYFYMMILXSKSSRVIIVANKKILMNQHHFNTFALKQKVYLNDNNNRENVMMIAMRINXKLNKRLRELILIITHYEELKELIVRAKHLADVMTENQEYHEKIYKVYSDSQTSLKTVKVMILTKDQTRLQXVQIMHESIQFQEVTLKLH
Ga0272438_10117747F041516N/AMLQTLTNNTQMIQKVIYIHEVYNLSLKNHEVIHEKESLSDIEKMLHMSKECVLVENFNLHHLTXEESFYSR
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