NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272438_1011981

Scaffold Ga0272438_1011981


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1011981 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7920
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016760Metagenome244Y
F029944Metagenome186Y
F036995Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10119813F036995AGGAGGMTDDSRDDRLLTPFDGTLADGGPDRLAFEPTATGDPAVTYYTRAPDGYGPDDVRWQTITDPAEIAAIEGALARGVAPPYEVWVDQAPAALDPGDLTPTEEGPPVYAWEQTGPAVGEGQLYEITDPVVRAAYEEAHPLQQGIEIINPADFYDAAWAADAARATDPALYDAQIDALVSTGATWLEVEHAGGGVALGRYDAGPIERDTNGWEPVRVADGPDDGPTGNGYPDEVTARQAAIAYNGADLAGVELTLDPAPVAALDRDLTPTLDL
Ga0272438_10119814F029944AGGAGGMRTMDPGTGDALAYTVDRRGRVLCVWAATAVDAPARADAAPPVALRTLVAPLTWEPVQRLLAWGAREGMTAAELLDSCRTATRPPATRTPRGRAIGGKAR
Ga0272438_10119818F016760GGGGGMKRQLQRTARATGRGLYILAVPKTVRRSTDELRGVEISPALGLVLRLAALLVLAGTVLAVHAVGHPLLGLARAALLFVGAVVILALSGALAPQGRLLLSYAKRESARRGLTWRGRLFRALARRLEPAMSKKEKGKTNVR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.