NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1012728

Scaffold Ga0272438_1012728


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1012728 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7560
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021026Metagenome220Y
F038009Metagenome166Y
F087979Metagenome109Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10127281F038009N/AMSSMIKASSFQLNYVKLYKRLIELICLKNNRNSKEERILTLDFXXVFFLNDLKNMTRSFLFHMRNKIEXDLFLVNELNISXLLINEQEIILLLVSRXETELLLASELRTELLLVSELKTELLLSSKXETKLLLASELKTELLLSSEXKTRLLFASELKTELLLSSEXKTKLLLVNDL
Ga0272438_10127282F021026N/AMIVFCILRQAQFRVLTFILIDSEVSAYVFMNKFFTQQHHFLLHQLTHFHRLQEFDDQVTLINDITHVIKITIILDKHIEKLFFYIIELSQYFIIMSLSXLHHHVIDVNFKHNILILFFFFCLNHYCSFLVKIYDLNQQEENFSFKVNKVAFSQSHS
Ga0272438_10127284F087980N/ALINNERVVEQFTQSVIENSVEIFRAVRKLQNQVQQHDVIILSLFIILNSSIYIKLNSQFLAMIVQIIAQILNNQSFFIIHLFANSVAVFIASRFEKLLDIFKYKRDKD
Ga0272438_10127285F087979N/AMKEKNKSSTFIYMNXAKLKLNSSFIDLRLQKFMHMIKMIKTELLKLN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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