NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1014184

Scaffold Ga0272438_1014184


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1014184 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6995
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075492Metagenome118Y
F078022Metagenome116Y
F098337Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_101418410F075492AGGMTDHSDLARATGGSSVNQTTTDEILAAIAAKDLHGATADRVARADRVARAIGLGIDDTLMQDTLEELVEQGVLDRLGIGHGAVYTLSGGI
Ga0272438_10141845F078022AGGAMSDDYITLIEASKRTGLKSSDPLYAAARTGRLKTVTMAAGPRTVRRTTQAWLREYLDSQRRET
Ga0272438_10141846F075492AGGTGGMFDHPNPMHTTGESSADDTATDEILAVVTAEEPRGATADQITIAIGLGFDGTLIRDTLEELVDRGLLNQFGIGHGAVYTLNPRT
Ga0272438_10141849F098337AGGAGMCMPAHTLAATLASFDGDADEATIVARIVALRQDPDWRVALHHGNKRCAIALTHGPTDHLYRVYLDRVKSAEGAIWRRAA
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