NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1017989

Scaffold Ga0272438_1017989


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1017989 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5877
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008169Metagenome337Y
F033265Metagenome177Y
F080688Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10179891F033265N/AMMTSQSKKXFESCYETFINCMIYSVLLFQTETLNSYQLCEKVFASDXELQLVYSQSIILRSMINRNESIKTLNANLESTAITCKMTELNEYLXXNSVTIQISSRSLQXFLSTSIRNFTFKXVLIQIQLTMKQLVNILKLEKSMILSFEXKSYXTSIINNXKRRSXSSKFRLDLSLSSSCL
Ga0272438_10179893F080688N/AMLXTLMTXAEMHXTIHSDVHRSSDFENLHEKQTVKSITSQLFEHSIEVQLSNHL
Ga0272438_10179896F008169AGAAGLKTRLQAKENTSSDFIYFERSRPQKIPDSSLFTDEKNSTXKNXYGKIQNKLEINVNLFSNEXFKLSYVHSRLFDDAVEITQTRRERDYINFYKIVDDLLKELAQLFDDSNKKVNFRRKYYNLIQEFKKFNEFYTQFQRLFFYLDYHEKQLIADLKDKIHFRLRFVXVDQLVQSDSLKKIHFYLICLNNNQRVIRKIKNKIKRINDLFKTIFHRVSVVTQSVNHSKSDQLKSRDAILTSVKEADILVESCFICHKSDHSFKECLDRSTRINAVNKKYDRFDFNSNFDSKN
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