NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1018459

Scaffold Ga0272438_1018459


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1018459 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5768
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021452Metagenome218Y
F033264Metagenome177N
F079402Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10184592F079402N/AMRNKLKMNKNHFSIKEMKIAYVKSRVSETTIKHIASRMKNTITNSFLEAEEILSIINKMYDDFNRHHTTQRQFLKLYQNKIFFHEF
Ga0272438_10184593F021452N/AMLDDSFDFKSFIVDVILNSLEKIFRFFALIDIKVTDMTFIDDSLISELCERFDIQSISLFKSKSIRSYDETLDRRSITYALYISVTIQEHKNEMMSLLITRLDQHKIIIDNL
Ga0272438_10184598F033264N/AAADYSFIDELIAQNVCDHLQIEPLSLIKLKSIRGFDDHYAKKFIIHAIYSNLTVQDHMKRSVSMLIIRLDQHQMILGKT
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