NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1019122

Scaffold Ga0272438_1019122


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1019122 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5621
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F070712Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10191221F070712GAGMNDIKEKKFLIKVRKQVIFAEKXDSLNLYRKIEVTTFVDYSKLHDVILTSVKDINLQAEICFICYKSDHTSRECFDXSKVNALKDDEFNXFTSNSEFNSDSKN
Ga0272438_10191223F002432N/AMQNDXAKXLSMIEFSENFNIFSIISMTSFYFNKSFHSRMSFNSDTTDYKTTCERLEVKKADNIIIXMKELLIFDHQQLKKTKQIIEAQINKHRRDVIYEVNDXVXLFFRNIKTTRSCKDLKDKQLKFYQITVKVEIFYHLHLSISMKQLHSIFSSKLLCSCLDDFLSEQ
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