NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1022058

Scaffold Ga0272438_1022058


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1022058 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5072
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F009580Metagenome315Y
F038009Metagenome166Y
F094625Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10220582F038009N/AMIKASSSQLDYVKLYKRSIKLICLKDNRSFKEERILTLDFXXVFFLNDLKNTIKSFLFQMKDKTEXDLFFVNELNISXLLMKERKVILLFVSKRKTELLLASELRTELLLVSELKTELLLSNEXETKLLLASELKTELLLLSEXETKLLLASELSAELLLVNDL
Ga0272438_10220583F009580GAGMICIQISERDLAQRLNFSYKQQDFFIYIDDVTVVNVHDMQSEELLIXAFFSNFAXMLQLAIVAKLSLVADFLDLRNDQNLILNDDNDKT
Ga0272438_10220584F001951N/AMTMTKLKFIDSLRNERERDEDTVKITVTEMMIFELKELLVNAEMLLTLMNKMMTKMK
Ga0272438_10220585F094625N/AMIENSVEIFRIMQELQNQVXQYDVIILFSFIILNSSVYIELNSQSLAMIAQIIAQILNNQSFFIIHFSANSVIVIIASRFKKLLDIFEYERDKDXLNAXKQSLIQRMNVNDDHYFSHRVKIVYIESRLIINKKTYNLMNQYRVNDLCIIFIFAN
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