NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1022129

Scaffold Ga0272438_1022129


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1022129 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5062
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Roizmanbacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034417Metagenome174Y
F058564Metagenome134Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_102212910F074201AGGAGGMDRIDITPTPEACRQIARLFRAQQADAEALAARAARALDDLDGRADADLAPWDRALLAAAFEALYEDEGARIRHMAEALDALGPYAHADDSEEDPEDAR
Ga0272438_10221295F034417AGGGGGMTWAISKPRDAWVRQAREAWAALEPQAPHGSALRALAAIDHHHFARLIEALTALMPSQVSQELQDLAGLRPVGQVLGMPDVGDADDTDAKNW
Ga0272438_10221298F058564AGGAGMTPIGYTMSGHPLCLPCFEGDYRLTPDGAAYARDGQSVTAAVVPIYSGDPDDGAPCAGCGLALAAPSDAGVVWTCPYCGSTDLRILYDERRACRIGTLNDTGDPADAEPWPSYASDEFVDIDPGSFAVHCDACNSHDITPRKGGQTNDLGHQQAA
Ga0272438_10221299F034417AGGGGGMTWAISKPRDAWLRQAKDAWAALEPQAPKGSQLRDLAAIDQHNVARLIEALAALTSGQVSQELQDLAGLRPVGEALGMPDTGDADGDDAWD
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