NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1024195

Scaffold Ga0272438_1024195


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1024195 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4751
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F008735Metagenome328Y
F089602Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10241952F008735N/AVNLLIYDESXLDIDDLDSMREVMIIIHIHALYQTLLSCIQSIFVLFIFRYVEKLLESRSDDDSDRIHNEVNNEERLIVQDLCNDLSYHHERLRIQLYIDXRTENDEREXNDDIMLLNLILKLTHCAKDLDXIFDHTLSELFNSTLIID
Ga0272438_10241953F089602N/AMKNEXSSFIEILSEKDNDLSEIIDIVLQTVNQREIFHQRTFFLLIEEIVVVDKAIHVLLQSFAKI
Ga0272438_10241954F001951GAGMIIIMKLKFIDSLRNKRERDEDTVKTTVTEMMIFELKELLVNAEMLLTLMNEMMTKTKRD
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