NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1026862

Scaffold Ga0272438_1026862


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1026862 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4406
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021026Metagenome220Y
F080690Metagenome114Y
F087979Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10268621F021026N/ALKLFEFDSTFKDNHMIVFCILRQAQSKVFALVLIDSEVFAYVFMNKFFAQQHYFLLHQLIHSCRLQEFDDQVSLINDITHVIEITMILNEYIEKLFFYVTELNQYFIIMSLSXLHHHVIDVNFKHNILILSFFFCLNHCCSFLIKIYDLNQ
Ga0272438_10268622F001951N/AMIMMKLKFIDSSRNEKERDEDTVKTTVTEMMIFESQELLVNTEMFLTLMNETMMKMK
Ga0272438_10268623F080690N/AMKSLHNFLIDDEHVVKQFTSSMIENSVEIFHVMRKLQNQVRQHDVIISFSFIIFNSSIYIKLNSQSLAMIVQIIAQILNNKSLFVIHFFANSVAVFIAFKFKKLFNISEYEKNKDQLNAXKQSLIQRMNVNDDCYFSHRVKIIYVESXLIIDKKTHNLMNQYRVNDLYIIFIFADXXHKLLHCCNNSFKAEDAHLYLRETLKQGMNSFVDYYNLFYQKKECFLMKDFSLIDYLKRNVNYFIQVIIFFXRNLD
Ga0272438_10268624F087979N/AMKEKNENSTFIYMNRAESRPDSKFIDLRLQKFMHMTEMIETELLKLN
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