NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1028853

Scaffold Ga0272438_1028853


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1028853 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4188
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F032102Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10288532F003820N/AMKLFSYLDYDDCILMNDLQNKINNRLQNALSICSENFTSLFRLKKFLQDVNNKQRVNYQLRSERCTVIVKVTVVSDKHATFLLMMTLIIDYVKSTIFSISESVKSLIICYICKIFNYLFKNCFQLNKINTSASHAFILRLHKIIISKNKENEKMSFKNNEAKN
Ga0272438_10288533F000597N/AMSDDSFASESLTIECILSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHTIDTASMLITRLDQH
Ga0272438_10288536F032102N/AMKIADLEKNISESIYKQVLEINRIDENCTLLREAIARDETQYEDIKLKNCRTQNEILYHDSQL
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