NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1042854

Scaffold Ga0272438_1042854


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1042854 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3147
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F039410Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10428541F000597AGGMKNVLISSTTSRSDDFFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITYVIYSNLTVQDHTIDTASMLITRLDQHQMILEKTXMNKIDLV
Ga0272438_10428542F005901N/AVISRLEDDAAEHIFAXRQHDALHSYISIDELFEHLKEIYDELNKNRKCRREYNALRQADKSFNVFYFNFMKLFSYLEYDDCTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERRTVIVKVTVVPDKRVTSLSITTSIISYVKSTISSISESARSSIICYICKIFDHLFKNCSQLNKIDTSASRAFISRLHEIIISKNKENEKMSFENSETKN
Ga0272438_10428544F039410N/AFDDSFALISFKFXVVSSIEEMFRAFKSHXVLYAISLLMFVMNKAKTSILSLFEXFNSVLNEAASMLRIENDSSRTSHLSIIEILVXMIEESEDDRDQLECFELRRIEKTEIEVFNXFEKTMTSFCIFNNISFLFIQSLLNMTSXXSISAISIDTVNFLXLSMMRLNRILXVMIFLNIFSS

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