NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1043799

Scaffold Ga0272438_1043799


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1043799 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3097
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009377Metagenome318Y
F057012Metagenome136Y
F104136Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10437991F009377N/AMTRSTELESESVSIARYELQNARRESLLSQNRTASEEKNTNALLFNHKMIKISISTELNAXISANETNDLVVFIKYICQQHDIEIKTHNDMIQMLNDVNKIKIELKAINIELKATQTTLNVVXTCLQKEMKKKNMIIHYLEATSSRLSTLISKDRFSKSIKLSDSSLFEDSKQNVNNXLFQMQNKLKMNKNHFSIEEMKIAYVKSRVSETTIKHIAFRMRDTITNSFLEAEEILSIINKMYDDLNXHHTTQQQFLKLYQNKIFFHEFXMKFQRLSVKLEYNNKTLLNDLQHKISSDL
Ga0272438_10437992F104136N/AMIFNIRLAQIFSESXSTNELXIXTNSSTSACKSTFDXRNXMLDQFSRHQLFKSLALLLASXRRSLLQSQLQSLHERNSEYRTSILLERSCLRKNSASNARSQNIKHVTVLNQFRCTKSQRIRKMICFHQSSDXEQHAHILLHQYARXLVXFQVVYCXRHLE
Ga0272438_10437993F057012N/AMLDDLFDFKSFIVDVILSSLEKIFRFLALIDIEVTDMTFINDSLISELCERFDIQSISLFKSKSIHSYDEILDRRSITHALYISVTIQEHKNEMMLLLITRLDQHKIIINNFXLKRNQILIDSANDXLISSSNIRILKLIVSKASSQSAFHKFKSSEICEIKRKNLKSMSTIILKRTTNSKSVNRFIESALIRKQST
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Institute for Fundamental Biomedical Research
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