NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1142867

Scaffold Ga0272438_1142867


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1142867 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1196
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005901Metagenome386Y
F017767Metagenome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_11428671F017767N/AMKDVLISSTTSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFID
Ga0272438_11428672F005901N/AMNDKLQANVDHFVDETICIVYVISRLEGDAAEHIFAXRRHDSSHSYISIYELFEHLKEIYDELNRNRKCRREYNALRQADKSFNVFYFDFMKLFSYLDYDNRILMNDLQDKINNRLQNALSVCSENFTSLTRLRIFLQSVNNKQRANYQLRSERRTVIVKVTIVPDKRAATSLPAVTTSIIEYVKPTIFPISESVRSPIVCYICKISGHLFKNCSQNKINISTSRAFILRLHEIVIPKNKENEKMSFENSEAKN
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