NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1143334

Scaffold Ga0272438_1143334


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1143334 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1193
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018487Metagenome234Y
F061398Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_11433341F061398AGGMKQNEVILNADRAFLMIEFTETIIQNREASAESEFNYVMMSATFFTNLIQKKEEKQKKIEVFLISMTDIEKALTSQKKINLRTILSDHYHEFLDVFDHMMTEKLPPLREEGTDHQIELKGVNEKESKVP
Ga0272438_11433342F018487GAGMNSASFTMSTLVNKKSYAHTLYDTECLFYEMITSCFARTHNLQRMKIRPHIITGFDEPSGSSVNEVVVVQIDINRHQKSRTFFYIVSKLAFYDLILGLS
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