NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000002

Scaffold Ga0272429_1000002


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000002 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1079954
Total Scaffold Genes955 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)567 (59.37%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y
F015284Metagenome255Y
F020636Metagenome222Y
F100076Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000002146F020636N/AMFITMFRRDFKNNLKNKIMRNNKFINDMFDFIEIIINFDNKLYKRIIKKQYD
Ga0272429_100000227F100076N/AMHLDNAFVRYLCVIIFKLFLVIQIMRIFLKIENFDILTSFSIAWRVDRVESKNR
Ga0272429_1000002761F010658N/AMIDFDAIDNFIIRALVERKEYSTQKKLDAYNLIIVYENSLLAKNEKVNKKTKLLSIAI
Ga0272429_1000002762F015284N/ALFNYNILKVNKNELLLANKYELNATLRILKDNKKEFSIKKEKLQIFIDKIDEYIKKHYDKSLQRHSRMIKIL
Ga0272429_1000002763F007459N/AMYSSCFAINFSLHAIICEYLISLSIIINIESYLSLVARFVNLSNLIIKFIVTLFHNNLDN
Ga0272429_100000291F007459N/AMYLSCFAVNFSLHAIIYKYLISLLIITSIELYLFLIVKFVNLSNLVIKFIVTLSYNNLDN
Ga0272429_100000292F015284N/ALFNYNILKINKDKLFLANKYELNTILQILRDNKKEFLIKKEKLQISIDKIDECIKKYDDKLLQKHLKVIKTLQLLRQHY
Ga0272429_1000002933F015284N/ALFNYYILKINKNKLLLANKYKLNTILQIFRNNKEEFLIKKEKLQIYINKIDKYIKKYYNKLLQKHLRVIKIL
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