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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000005 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 774732 |
| Total Scaffold Genes | 651 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 360 (55.30%) |
| Novel Protein Genes | 14 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (7.14%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007459 | Metagenome | 350 | Y |
| F010658 | Metagenome | 300 | Y |
| F015284 | Metagenome | 255 | Y |
| F015552 | Metagenome | 253 | Y |
| F020636 | Metagenome | 222 | Y |
| F100076 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_1000005251 | F010658 | N/A | MIDFDAIDNFIIKALIERKEYSTRKKLDVYNLVIVDKNSLLNENKRVNKETKLLSIAI |
| Ga0272429_1000005252 | F007459 | N/A | MYFNCFAMNFFLHAIIYKYLISLSIITSIELYLFPIVKFVDLGNLIIKFIVTFFHNDLDN |
| Ga0272429_1000005399 | F020636 | N/A | MFQQDFKNNFKNKIMCNSKIISNIFDFIKVVINLDNKLYKRVIKKQYN |
| Ga0272429_1000005400 | F100076 | N/A | MHLGNAFVRYLCVIIFKLFLVIQIMRIFLKIENLGILTSFSIAWRVDRVKLKNR |
| Ga0272429_1000005406 | F015284 | N/A | LFNYNILKINKNELLLINKYELNVILRIFKNNKEEFLIKKKKLQIFINKIDKCIKKHYDKLLQKHLKVIKIL |
| Ga0272429_1000005408 | F010658 | N/A | MIDFDAIDNFITRALVKRKEYFIRKKFNAYNLMIVDENSLSNENKRVNKKTKLLSIAI |
| Ga0272429_1000005410 | F007459 | N/A | MYFSCFAMNFFLHAMTCKYLISLSIIINIELYLSLVARFVDLSNLEIKFIVTSSHNDSSN |
| Ga0272429_1000005421 | F007459 | N/A | MYFNCFIVNFSLHIIICKYLINLLIITSIELYLSLIAKFVNLNNLIIKFIVTLFYNDLNN |
| Ga0272429_1000005431 | F010658 | N/A | MIDFNAINNFITKALIEREEYFIRKKFNAYNLVIINENLLFARNEKVNKETKLLSITI |
| Ga0272429_1000005447 | F010658 | N/A | MIDFDAIDNFITRAFVKREKYFIRKKFDAYNLIIVNKNSLLARNKKLNKETKLLSIAI |
| Ga0272429_1000005448 | F007459 | N/A | MYFNCFAMNFFLHAIIYKYLISLLIIISIELYLSSIARFVNLNNLIIKFIVTLFYNNLDN |
| Ga0272429_100000569 | F100076 | N/A | MHLDNAFVRYLCVIIFKLFLVIQIMRIFLKIENLDILTSFSIAWRVDWVELKNR |
| Ga0272429_100000576 | F015552 | GAG | MTQLTLNAKILNITKITSFFVNYNKEFNLFKKERMHLLTQLVIERVATLKKIHDNILKMQERSIKY |
| Ga0272429_100000577 | F007459 | N/A | MYLNCVAINFFLHAIICEYLISLSTITSIKLYLSSIAKFVNLSNLIIKFIVTSFYNDLSN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |