NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000006

Scaffold Ga0272429_1000006


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000006 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)703313
Total Scaffold Genes566 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)323 (57.07%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y
F015284Metagenome255Y
F015552Metagenome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000006131F010658N/AMIDFDAISNFITRALVERKEYSTQKKPNAYNLIIVDGNPLFIENKRVNKETKLLSIAI
Ga0272429_1000006132F015284N/ALFNYSIFKIKNDESLLINKYELNAILRIFRDDTKEFLIKKEKLQIFIDKIDKCIREHHNKLLQRHLKVIKTL
Ga0272429_1000006133F007459N/AMYSSCFAINFFLHAIIYKYLISLLIITSIKLYLSSIARFVNLNNLIIKFIVTSSYNDLSN
Ga0272429_1000006134F015552AGGMTQLALNAKISNITKITLFFVNYNKELNLFEEKRMHLLAQLVIERVATLKKVYDNISKMQERSIKY
Ga0272429_100000673F015284N/ALFNYNILKINKNKLLLIIKYKLNIILQIFKNNKKEFLIKKEKFQIFINKIDKYIKEYYNKLFQKHLKAIKTL
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