NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000012

Scaffold Ga0272429_1000012


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000012 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)626734
Total Scaffold Genes392 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)109 (27.81%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y
F015284Metagenome255Y
F020636Metagenome222Y
F100076Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000012122F100076N/AMHLGNAFVRYLCVIIFKLFLVIQIMRIFLKIENLGILTSFSIAWRVN
Ga0272429_1000012134F100076N/AMHLDNAFVRYLCVIIFKLFLVIQIMRIFLKIENLGILTSFSIAWRVD
Ga0272429_1000012346F007459N/AMYSSCFAINFSLHAIIYKYLISLSTITSIESYLFLIARFVNLSNLIIKFIVTLSYNNSSN
Ga0272429_1000012349F010658N/AMINFNTIDNFIIKALVKREKYFIRKKSNAYNLVIVDKNSLFARNEKVNKETKLLSIAI
Ga0272429_1000012350F020636N/AMFRRDFKNNLKNKIMRDDKFISDIFDLIEVIINFDDKLYKRAMKKRYN
Ga0272429_1000012369F015284N/ALFNYNILKINKNKLLLVNKYKLNTILQILRDNKKKKLIKKEKLQISIDKINRYIKEYYNKLLQKYSRIVKKF
Ga0272429_1000012371F100076N/AMHLGNAFVRYLCVIIFKLFLVIQIMRIFLKIENLGILTSFSIA
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