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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000017 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 545504 |
| Total Scaffold Genes | 689 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 393 (57.04%) |
| Novel Protein Genes | 15 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (40.00%) |
| Associated Families | 15 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001951 | Metagenome | 612 | Y |
| F005901 | Metagenome | 386 | Y |
| F006206 | Metagenome | 378 | Y |
| F013598 | Metagenome | 269 | Y |
| F021896 | Metagenome | 216 | Y |
| F032102 | Metagenome | 180 | Y |
| F041516 | Metagenome | 159 | Y |
| F044226 | Metagenome | 154 | Y |
| F055319 | Metagenome | 138 | Y |
| F071806 | Metagenome | 121 | Y |
| F087980 | Metagenome | 109 | Y |
| F089602 | Metagenome | 108 | Y |
| F089603 | Metagenome | 108 | Y |
| F102180 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_100001715 | F089603 | AGG | MYIDASQIRKKIAEVETETGTTVIFTHELVRFSKATSVSDKIITTKAKLQAISDAIAICSEKALKNSGI |
| Ga0272429_1000017268 | F013598 | N/A | MNFIIDLSDSYDYNVILTVICKLSKEKHYISCIIDDEDITVEKTAEMLLQ |
| Ga0272429_1000017269 | F032102 | N/A | MKIADLKKNISESIYKQILEINRIDENCMLLREVIARDETQCENIKLKNCRVQNEILYHDNQL |
| Ga0272429_1000017272 | F000597 | N/A | VKDVLISSTTSRSDDSFASKSLTIECVLSSNEISYSLKSLINIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHAIYLNLTVQDHTIDTASMLIIRLDQHQMILEKT |
| Ga0272429_1000017273 | F005901 | N/A | VISRLENDAAEHIFARHRHNASHSYISIDELFEHLKEIYDELNKNRKCRHEYNVLRQADKSFNVFYFDFMKLFSYLEYDDCILMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERRTVIVKVTVVPDKRATSLSVTTLIISYVKSTISSISESARSSIICYICKILDHLFKNCSQLNKIDTFAFHAFTLRLHEIIISKNKENEKMSFENSEAKN |
| Ga0272429_1000017274 | F087980 | N/A | MIENSVEIFHVMQELQNQVRQHDVIISFLFIIFSSSIYIKLNSQFLAMIAQIIAQILNNQSLIIIHFFANSVAVFIVSKFKKLLNISEYEKNKDQLNA |
| Ga0272429_1000017276 | F055319 | AGCAG | MIEVRVKRLKLVNKMICIQISERDLAQKLDFSCRQRDFFIYIDDITVVDVHDTQSEEFLS |
| Ga0272429_1000017282 | F021896 | N/A | VTKNNLESEDFLKNVECNLTFLRSDKEYIFSDETSERNSYSTIVIDESSIKVRKI |
| Ga0272429_1000017285 | F006206 | GAG | LCKLDEILLKENYFEKLFLIDAHLISQNQSFSLRFLINSDSIVYTIIHSNLVNKVCEKLKIQSISLAKEKLIRDYDEKIFKKIITHKILFNLIIESHKKLTVSMLITDINHHEVILNKL |
| Ga0272429_1000017288 | F044226 | GAG | MMKFSDNFNIFSITSMIFFYFNKEFHSQISFDSDTTDYETTCERLEARKANDIVI |
| Ga0272429_1000017295 | F041516 | N/A | MTQKAIHIHKAYNLSLRNHEIIHEKENLSNIKKMLHMLKESILVEDFNLHHFT |
| Ga0272429_1000017299 | F102180 | GAG | LTLIITHHEELKELIARVKHLADVMTENQEYHEKIYKIYSDSQIFLKAVKIMTSTKNQTYLQQVQTAHENI |
| Ga0272429_1000017301 | F071806 | N/A | MKLQSQIITLDSVQLHLFSITSAFLQILVFMNLEIEEFDVEDIKSQLNQDILNLDEDSADIFTQTL |
| Ga0272429_10000174 | F001951 | GAG | MMIMIKLKFIDSSRNKRERDENTVETTVTKMIIFEFKELLVNAKMLLTLMNETMMKIFFLIFFSSLSACSL |
| Ga0272429_10000176 | F089602 | N/A | LSFIKVLSEENDDLSEIIDIAFQTVNQQEIFHQRTFFLLIKDIVVIDKAIHVLLQSFAKI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |