NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000022

Scaffold Ga0272429_1000022


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000022 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)483407
Total Scaffold Genes471 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)301 (63.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y
F015284Metagenome255Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000022236F007459N/AMYLSCFAINFSLHAIIYKYLISLLIIISIKSYLSSITRFVDLSNLIIKFIVTSSYNNLDN
Ga0272429_1000022237F015284N/ALFNYNILKVNKNESLLANKYELNAILQILRDNKKEFLIKKEKLQIFINKIDEYIKEHYDKSLQEHSKVIKILQLLR
Ga0272429_1000022238F010658N/AMIDFDAINNFIIKALVKREEYFIRKKFDAYNLVIVDKNSLLDKNERVNKETKLLSIAI
Ga0272429_1000022239F020636N/AMFRRNFKNNLKNKIMRNNKSISDMFNLIKVVIDLDDKLYKKAMKKKYN

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