Scaffold Ga0272429

Basic Information
Taxon OID	3300031449 Open in IMG/M
Scaffold ID	Ga0272429_1000027 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031449 Open in IMG/M

Scaffold ID

Ga0272429_1000027 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	428726
Total Scaffold Genes	373 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	233 (62.47%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

428726

Total Scaffold Genes

373 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

233 (62.47%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.7	Long. (^o)	160.75	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.7

Long. (^o)

160.75

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007459	Metagenome	350	Y
F010658	Metagenome	300	Y
F015284	Metagenome	255	Y
F015552	Metagenome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_1000027243	F015552	N/A	MTQLTLNAKISNIIKVTSFFVNYNKEFNLFEKEQKHLLAQLAIERVATLKKIYDNISKM
Ga0272429_1000027244	F007459	N/A	MYFSCSTMNFFLHAIICKYLINLLIITNIKSYLFSIARFVNLDNLIIKFIVTLSYNDLDN
Ga0272429_1000027245	F010658	N/A	MINFNAIDNFIIKALIDRETYFIRKKSNAYNFIIVDKNLLLARNEKVNKETKLLSITI
Ga0272429_1000027248	F015284	N/A	LFNYSIFKINKNKLLLANKYILNTILQILRDNKEEFLVKKEKLQISINRIDKYIKKYYNRLLQKYSKVIKIF
Ga0272429_1000027302	F015552	GAG	MTQLTLNAKVSNITKITLFFVNYNKEFNLFKKEQKHLLAQLVIKRIETLKKIYDNIFKM
Ga0272429_1000027303	F007459	N/A	MYFSCSTINFSLHAIICEYLISLLIIINIESCLSSIAKFVNLNNLIIKFIVTLFYNDSSN
Ga0272429_1000027304	F010658	N/A	MINFDAIDNFITRALIKREKYFIRRKSNAYNLVIINENSLLARNKKVNKETKPLLIAI
Ga0272429_1000027305	F015284	N/A	LFNYNILKINKNRLLLINKYKLNTILQILRDNKKEFLVKKEKLQIFIDKIDKYIKKYYNKLLQKHLKIIKIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272429_1000027

Overview

Ecosystem & Geography

Associated Families

Sequences