NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272429_1000028

Scaffold Ga0272429_1000028


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000028 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)422084
Total Scaffold Genes365 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)211 (57.81%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F015552Metagenome253Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100002828F007459N/AMYFNCFTINFFLHAIMYKYLISLLIIISIKLYLSSIAKFVNLDNLIIKFIVTSFHNDLNN
Ga0272429_100002830F015552N/AMAQLALNAMISNTTKIISFFVNYNREFNLFEKERKHLLTQLVIERIATLKKIYDNILRM
Ga0272429_100002831F007459N/AMYSSCSIMNFSLHAIIYKYLISLLIIISIELYLFSIARFVDLNNLIIKFIVTLSYNDLDN
Ga0272429_100002832F020636N/AMFRRDFKDNLKNEIIRNDKFISDMFNFIEVVINFDDKLYKRVMKKRYD
Ga0272429_1000028347F020636N/AMFRQDFKNNLKNKIMRDNKFINDIFDFIEVVIDFNNKLYERIIKKRYN
Ga0272429_1000028348F007459N/AMYFNCFAINFSLHTIIYKYLISLSIITSIELYLFLIVKFIDLNNLIIKFIITLSYNDLSN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.