NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272429_1000031

Scaffold Ga0272429_1000031


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000031 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)406469
Total Scaffold Genes368 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)225 (61.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000031120F007459N/AMYSSCFAMNFSLHAIICEYLISLLTITSIELYLSSIARFVVLGNLIIKFIVTLFHNNLDN
Ga0272429_1000031123F007459N/AMYLSCSAINFFLHAMIYKYLISLSIIINIKLYFFSVVKFVDLDNLMMKFIVTSFHNDSGK
Ga0272429_100003113F010658N/AMIDSDAIDNFMIKALVKKKDYFIQKKSNAYNLVIVDENSLSDENERVNRETKSLSIAI
Ga0272429_100003114F007459N/AMYSSCSAVNFSLHAIICEYLISLSIIISIESYFSSIAKFVDLDNLIMKFIVTSFHDDSDK
Ga0272429_1000031187F007459N/AMYFSCSAVNFSLHAMICKYLISLLIIISIESYLSSVAKFVDLDNLMMKFIVTSSHDDLDN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.