NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000043

Scaffold Ga0272429_1000043


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000043 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)363172
Total Scaffold Genes376 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)108 (28.72%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (5.56%)
Associated Families16

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F009377Metagenome318Y
F021026Metagenome220Y
F021216Metagenome219Y
F042102Metagenome158Y
F048019Metagenome148Y
F050043Metagenome145Y
F055318Metagenome138Y
F057012Metagenome136Y
F064254Metagenome128Y
F086377Metagenome110Y
F094622Metagenome105Y
F094624Metagenome105Y
F096306Metagenome104Y
F096307Metagenome104Y
F104135Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000043120F048019N/AMRHACNSFNVNEHAFELFFAQAFMKALQDESTVYALVIINIVEELIIEHQVRAINNVMSRITNAFETQTLLVELKEYEDVFSTESADKLSLHEDHDHEIEIIAESSYESLYNLLNTELATLR
Ga0272429_1000043123F042102N/AMLEDVNKINITLKIMQMHLQKENRNKNVIIHHLKVASSQQSTSISEDXFSKSIKLLNSSLFEDLLQNVDNXLSXMXNKLKINKNHFSIEELKIVYIESXVSKAAIKHIASCMQDIFLNSFLEVEEVLSMINKMYDDLNHHHTTQYQYLKLYQNKIFFHEFXMKFQRFSAELEYNNETLLDDFQHKISSDLQRATLNEXITNLNKFINICMXVDVRLTELNTRSIIKASATQAACSVISTLTTQFTSSVSSXKKLRRLKLNSIQKELFKKKLCFKCKKSKHRAYDCLKMT
Ga0272429_1000043149F021216N/AMKSRTKSNATRREHHELEKALKNHERSNDDHSNDILNEHTESILSCDIIEELNEREKK
Ga0272429_1000043152F104135N/AMNQDINVTQQYVNASQRSNQMIXTFAAHLSILKHQLSLYSDEHKRTHLFIKLRSELRVIITNVQSISITXDALIDLVAQLKTNLRKEHILLSKXSXDENLHDQDKVNKKTHLKQKKSHXLIKLNFSSKTSSHASSCYSKNLFNIMCYMCNQKNHYFTDCKDEKIKNRLKESDASRVFIDSMSHMSHFKISRKDKLLMNASNHQEKNKKFSL
Ga0272429_1000043158F064254N/AMQELYEFISFLFSLSFIXFFNDITAXNXFSMLIESIIXMIIVAALMISKSFFKFIMFSSYCIAFHSIFHLRHVNKMCLINIXSLSHLHIIIATSSTHLSCRNXLKSIFLMYNCVNNTLXDFAXFLCSHRCRCVIFDVKYXKXAALNLSFQTILHVYLICFCMNINLVITSMHXCSVSNKDKSCTSLIILFIASFSSTSACLITQCNFSVTS
Ga0272429_1000043159F094622N/AMSISQHHFNTFKLKQRVYLNNNDSKENVMMIAMRINXELNKRLKELTLVITHHEELKELIARIKHFADVVTKNQKCHENIYKVYSDSQTSLKTVKAMISTKDQTCLQ
Ga0272429_1000043165F021026N/ALIDSEVLTYVFMNKFFMQQHYFFLHQLTHSCRLQEFNDQVVLINDITHVVEITMILNEHNKKLFFYVIELSQYLIIMSLSXLHHHVININFEHNILILSFFFYLNHCCQSFIKIYDFNQQKENFLLEVNKVAFSQSCSQFAHKKQLSSQIILHSQEAIQSTDHSQEAI
Ga0272429_1000043167F086377N/AMIQYFXNQRQRISILDCDNIQISIVHTKAKFFFEFLDEENRDDHLKVIDLNEIFA
Ga0272429_1000043174F094624N/AMCKMLKINAKLSMIYHSEINDQIKKVNAVIKHYLXVFVNYMQNDXTKXLSEVEFIVNNKSSLITLTSLFLINLNQNSCLNFKSFESLLENLMFQAXNKLINVKKFIKKIKKLTEHLRDEMLITSIIYKFNVNLFHSCSYFKYFIEDKVXLNAHNLSIAHFAVKLNDHNVDFFKIKHVFKNNSLIIELNLSAFMKIYSIFHVILLNHITSDFLLS
Ga0272429_1000043216F096306GAGMYDNCAVDSLIVDDDSNEERSCKDNSELYASMILFDIATLIATNVKIVFVESNDK
Ga0272429_1000043226F002432N/AMXKSLCKXLRITASLFTVYHSEIDDQSKXVNQDVERELRIYCNYMQNDXVKXISMMKFSDNFNIFLITSMILFYFNKEFHSRMSFNSDMINYKTTHERLEARKADDIVIQMKELLNFDHQQLKKMKLIIEVQINKHRRNIIYEVNYXVXLSFRNVKTTRLCKDLKDKQLDLYQITVKVSIFYHLHLSVSMKYLHSMFSSKLLQLYSEDFLSKQHLESLKSITIKDDEHXEINNIELQMLSRSNTVQSQMNRSR
Ga0272429_1000043294F064254N/AMQELYESVSFLFLLSFIXFFNDITAXNXFSMLIKSIIXMIINVTLIISKSFLKFVMFFSHCIAFHSTFHLKHVNKMCLINIXSLSHLHVVVTISSTHLSCRNXLKSIFLMHNYINNALXDFAXFLCNHRCXCVIFDVRYQKXAALNFFFQTILHVCLIYFCMSVNLIITSVH
Ga0272429_1000043307F050043N/AMIKIXSXLKKDEVEENEKLRRTERVINKSTIIIHSCLCSIVSTTSFTQKINNVYVLSTRHHCCHLHQLHITYTIYNVIYTHYNRRXIVIQSKVSLFLVFSQRFEDFYXELLEXINECTSSFIRINKDINYXDXEXTHLKEKTIVMMNXLIEVRSETKVKDXVKDQIXVSSETL
Ga0272429_1000043339F064254N/AMQELYESVSSLFSLSFIXLFNDVTAXNXFNMLVESIIXMIVVTALMISKSFLKFVMFSSHCIAFHSTFHLKHVNKMCLINIQSLLHLHIVVTTLNIHLSCRNXLKSIFLMHSCVNNTLXNFTXFLYSHKCQCIIFDVKYXKXATLNLSFQTILHVYLIYFCMSINLVITSMHXCSVNYRNKLCASSIILFITSFSSTFACLIIQCNFSMTS
Ga0272429_1000043359F009377N/AMTRSTESESVSIACYELXNAKRKSLLSQNXTASEEEDTNASLNTEEKNMNMLFFDHKMIKISISTELNAXINIHEADDLIVFIKYICQQHDIEIKIHNDMIQMLNDVNKINIKLKATQTTLNAVQMHLQKEMKKKSIIIHHLEVTSSRLSTLISKDRFSKSIKLSDSSLFEDSRQNVNNXLSXMXNKLKMNKNHFSIEEIKFAYVKSXVSETMIKHIVFRMRNTITNSFLEAEEILSIINKMYNNFN
Ga0272429_1000043361F057012N/AMLDDSFDFKSFIVNIILSNLEKIFRFLILINIKVIDMTFINDSLISKLCECFDIQSISLFKLKSIRLYDKTLDQRFITHALYISVTIQEYKNEMMSLLITCLNQHKIIIDNLXLKRNQILINSANDXLISSSNIRTLKLIVSKASSQSAFHXLKSSEICKMKRKNLKSMSTIILKXTTNSKSVNRFIESTLIRKQST
Ga0272429_1000043369F055318N/AMLRDDEALCIDHMQSFRDHTDFDNFNVHVTSNLHADEKIK
Ga0272429_1000043373F096307N/AMLYIVVTQIDASIKKNVLKHKKDVDLKDVHDTKKCVYHRHLLITRNTKKCVCLENNRSXLEDARKEKKCXVISESNLNQI
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