NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000065

Scaffold Ga0272429_1000065


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000065 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)297493
Total Scaffold Genes299 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)183 (61.20%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000065120F007459N/AMYSSCFAINFSLHAIIYKYLISLLIITSIELYLSLIARFVDLSNLIIKFIVTLSHNDLDN
Ga0272429_1000065123F007459N/AMYFSCSAVNFFLHAMICEYLISLLIIISIESYLSSIAEFVDLGNLMMKFIVILSHDDSDN
Ga0272429_1000065126F010658N/AMVDSDATDNFMVRTLVKKEDYSTQKKSDAYNLVIVDENSLLDGNERVNKETKPLLIAI
Ga0272429_1000065128F007459N/AMYFSCSIINFFMHAIICEYLISLSIIISIELYLSSIAKFVNLSNLIIKFIVTLSYNNLDN
Ga0272429_100006558F007459N/AMYFSCFTINFSLHAIIYKYLISLSIITSIELYLSLIVKFVNLSNLIIKFIVTLFYNDLNN
Ga0272429_100006559F020636N/AMTMFRQDFKNNFKNEIMRNSKFISDMFDFIEVIIDFNDKLYKRTIKKRYN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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