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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000073 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 280769 |
| Total Scaffold Genes | 338 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 190 (56.21%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F021452 | Metagenome | 218 | Y |
| F021896 | Metagenome | 216 | Y |
| F055319 | Metagenome | 138 | Y |
| F065269 | Metagenome | 127 | Y |
| F071806 | Metagenome | 121 | Y |
| F087980 | Metagenome | 109 | Y |
| F102181 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_1000073215 | F021896 | N/A | MMKNNLESEDFLKSVECNLTFLRSDKEYIFSDEMSERDSYSTTIVIDKSFIEVREI |
| Ga0272429_1000073220 | F055319 | AGCAG | MIEVRMKRLRLVNKMICIQISERDLAQKLNFFREQQDFFIYIDDITVINIHDMQSEELLI |
| Ga0272429_1000073221 | F001951 | N/A | MTMMKFKFIDSSKDERERDEDTVKTTITKMMIFKLKELLVDAKTFLTLMNKTIMKTK |
| Ga0272429_1000073223 | F087980 | N/A | MIENSVEIFCVMHELQNQVRQHDVIISFSFIIFSSSIYIELNSQFLATIAQIITQILNNQSFLVVHFSANSVAVFIASKFEKLFDISEYEKNKD |
| Ga0272429_1000073229 | F071806 | N/A | MKLQSQIIILDSVQLHLFSIISAFLQILTFMNLEIEEFNVEDVKSQLDQDTLNLDEDSADTFTQTL |
| Ga0272429_1000073231 | F021896 | N/A | MMKNNLESEDFLKNVECNLTFLRSDKEYIFLDETSERNSYSTIVIDEFSIEVREI |
| Ga0272429_1000073236 | F055319 | AGCAG | MIEVRMKRLRLVNKMICIQISERDLAQKLDFSCRQRDFFIYIDDVIVIDIHDMQSEEFLI |
| Ga0272429_1000073237 | F001951 | N/A | MIMTKFRFIDSSRDERERDEDIVETTVTEMMIFELKELLVNAEMLLTLMNKTMMKTKRD |
| Ga0272429_1000073239 | F102181 | GAG | MIIVHVHALYQTLLSCIQSIFVLLIFKYVEKLLKSRSDDDSDRICKKMNDERRLIVQDLCDDLSYHCKKLRIQFYID |
| Ga0272429_1000073242 | F065269 | N/A | MTRSSESASIARYELQDARRESLLSQNRTASEEEDTNASLNTEEENTNALFFDHEMIKISISTELNA |
| Ga0272429_1000073244 | F021452 | N/A | MSDDSFDFKSFIIDIILSSLRKIFRFFTLIDTEVIDMTFIDESLMSELCECFDIQSISLSKSKLIQSYDEIFDRKLITYALYTLIMIQEHKNEMMFLLITHLDKHKIIIENL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |